Payroll with hours in multiple departments

We have one person, who for some reason, when his hours for payroll are entered with two or more departments, the journal entry for the payroll deductions gets weird.

For example, he has a deduction for $122.67 and the journal entry for this deduction will debit Benefits for $1091.32 and credit Benefit (with a different department) for $1213.99. The two net to the $122.67, but not sure why just his transactions are creating this oddity. We have other employees with ours in the same two departments that don’t create this transaction.

Does anyone have any thoughts on how to fix this (besides manually adjusting it).