There is no reason you can’t apply a Payables Doc Type Return to a Payables Doc Type Misc. See Apply in following window. Possibly you have a bad integration on one or the other. Or one is not fully posted? If you can open the Apply Payables window you first must select the Vendor and the Return, then see the docs available.in the scrolling window. The MIS should be there.. Maybe post up a screen shot of what you see? Or even the Payables Trx Inquiry window by Vendor. Both the Return and the MIS must show up as Open records before they are Applied. See follows:
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